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BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
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Error in GDCquery_clinic(project ="TCGA-TGCT") #613

Closed ayueme closed 1 month ago

ayueme commented 10 months ago

Hello there, I'm trying to download the clinical data from GDC TCGA, but when I run the following code:

GDCquery_clinic(project = "TCGA-TGCT")

it gave me this error:

Error in GDCquery_clinic(project = "TCGA-TGCT") : 
  Error: API returned more information

I tried other TCGA projects, they were all OK. Anything wrong with "TCGA-TGCT"?

Thank you.

AngelaQChen commented 1 month ago

I was able to fix this by updating to the latest version of TCGAbiolinks

install.packages("../TCGAbiolinks_2.32.0.tar.gz", repos = NULL, type="source") library(TCGAbiolinks)

clinical <- GDCquery_clinic(project = "TCGA-TGCT", type = "clinical")

ayueme commented 1 month ago

I was able to fix this by updating to the latest version of TCGAbiolinks

install.packages("../TCGAbiolinks_2.32.0.tar.gz", repos = NULL, type="source") library(TCGAbiolinks)

clinical <- GDCquery_clinic(project = "TCGA-TGCT", type = "clinical")

Thank you for your kind response.