Open 4479917 opened 5 months ago
Hi, I tried both
if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("TCGAbiolinks")
and
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") BiocManager::install("BioinformaticsFMRP/TCGAbiolinks")
But it reports: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/src/contrib/PACKAGES' Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2 (2023-10-31 ucrt) Installing package(s) 'TCGAbiolinks' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/src/contrib/PACKAGES' Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.3.2/library packages: boot, cluster, codetools, foreign, KernSmooth, lattice, mgcv, nlme, rpart Old packages: 'BiocManager', 'cachem', 'data.table', 'digest', 'farver', 'fastmap', 'htmltools', 'httpuv', 'matrixStats', 'promises', 'reticulate', 'rlang', 'RSQLite', 'Seurat', 'SeuratObject', 'sp', 'spatstat.explore', 'stringi', 'survival', 'uwot', 'xfun'
I am not able to install this library. Could you kindly guide me on how to proceed? Thank you very much!
Hi, I tried both
and
But it reports: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/src/contrib/PACKAGES' Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2 (2023-10-31 ucrt) Installing package(s) 'TCGAbiolinks' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.3: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.3/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.18/workflows/src/contrib/PACKAGES' Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.3.2/library packages: boot, cluster, codetools, foreign, KernSmooth, lattice, mgcv, nlme, rpart Old packages: 'BiocManager', 'cachem', 'data.table', 'digest', 'farver', 'fastmap', 'htmltools', 'httpuv', 'matrixStats', 'promises', 'reticulate', 'rlang', 'RSQLite', 'Seurat', 'SeuratObject', 'sp', 'spatstat.explore', 'stringi', 'survival', 'uwot', 'xfun'
I am not able to install this library. Could you kindly guide me on how to proceed? Thank you very much!