BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
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Error in GDCprepare: Allele-specific Copy Number Segment - samples duplicated #636

Open sigven opened 2 months ago

sigven commented 2 months ago

Hi, Thanks for a very useful package. Great work:) I have just tried (using v2.32.0) to download the allele-specific copy number segments from TCGA, as exemplified in the code examples provided here.

However, testing this returns the following error (also for other cohorts, not only TCGA-ACC):

Error in GDCprepare(query) : 
  There are samples duplicated. We will not be able to prepare it

Would be great to be able to get this function to work properly ;)

kind regards, Sigve