BioinformaticsFMRP / TCGAbiolinksGUI

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
http://bioinformaticsfmrp.github.io/TCGAbiolinksGUI
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There are random columns within the dataframe that contain row labels. In volumes, data is not saving locally. #19

Closed maxxu05 closed 7 years ago

maxxu05 commented 7 years ago

I downloaded a dataframe to work with but I am now unable to convert it into a numeric matrix due to the columns with row labels within them every 21 columns. Before your recent patch, I was not having this problem, so it seems like this patch introduced this issue. Attached is a picture for your reference,

Additionally, is it necessary for me to delete the entire image in order to update the GUI? When I deleted the image previously, I lost all my files that I had saved onto the docker. Even though I set up the volumes to a local folder, it was still deleted. Even now as I work on the new GUI, I am saving stuff in the docker volume, but it is not showing up in the local folder.

Thank you so much for your help. I really appreciate it!

image

tiagochst commented 7 years ago

Sorry, I know where the mistake is, that was not supposed to happen. I'll need to change it back to the old way.

maxxu05 commented 7 years ago

thank you! could you also address the issue of the data not saving in the local folders specified by volumes? I have been saving various data inside the container but it is not also saving in my local folder.

maxxu05 commented 7 years ago

photos for reference image

tiagochst commented 7 years ago

The only way to update would be to open a terminal and type sudo docker pull tiagochst/tcgabiolinksgui, I was not able to find it in kitematic (in that case you will need to remove and download again). Updating using the terminal should not erase the folder.

I updated to add a new volume. Now you will be able to get the files.

screen shot 2017-06-16 at 10 48 48 am
maxxu05 commented 7 years ago

thank you! I think those problems are now fixed