Open kokyriakidis opened 6 years ago
The last version is using more DLLs due to the number of packages than the default accepted by R. You will need to inscrese the R_MAX_NUM_DLLS.
If you receive this error message: maximal number of DLLs reached...
You will need to increase the maximum number of DLL R can load wit the
enriroment variable R_MAX_NUM_DLLS
.
For MACOS please modify the file /Library/Frameworks/R.framework/Resources/etc/Renviron
and add R_MAX_NUM_DLLS=120
in the end. Or you can run in R the following command:
system(' echo "R_MAX_NUM_DLLS=150" >> /Library/Frameworks/R.framework/Resources/etc/Renviron')
For UBUNTU please modify the file /usr/local/lib/R/etc/Renviron
and add R_MAX_NUM_DLLS=120
in the end.
Or you can run in R the following command:
system(' echo "R_MAX_NUM_DLLS=150" >> /usr/local/lib/R/etc/Renviron')
For other OS check https://stat.ethz.ch/R-manual/R-patched/library/base/html/Startup.html.
I fixed that but there is another problem now. It needs another package:
library(TCGAbiolinksGUI) Loading required package: shinydashboard Attaching package: ‘shinydashboard’ The following object is masked from ‘package:graphics’: box Error: package ‘TCGAbiolinksGUI.data’ required by ‘TCGAbiolinksGUI’ could not be found
When I try to download the package with this link: devtools::install_github(repo = "BioinformaticsFMRP/TCGAbiolinksGUI.data")
it says:
devtools::install_github(repo = "BioinformaticsFMRP/TCGAbiolinksGUI.data") Downloading GitHub repo BioinformaticsFMRP/TCGAbiolinksGUI.data@master from URL https://api.github.com/repos/BioinformaticsFMRP/TCGAbiolinksGUI.data/zipball/master Installing TCGAbiolinksGUI.data "C:/PROGRA~1/R/R-34~1.3PA/bin/x64/R" --no-site-file \ --no-environ --no-save --no-restore --quiet CMD \ INSTALL \ "C:/Users/Konstantinos/AppData/Local/Temp/Rtmp46vdTT/devtools1df04ba03e67/BioinformaticsFMRP-TCGAbiolinksGUI.data-b740f23" \ --library="C:/Users/Konstantinos/Documents/R/win-library/3.4" \ --install-tests
ERROR: this R is version 3.4.3, package 'TCGAbiolinksGUI.data' requires R >= 3.5.0 In R CMD INSTALL Installation failed: Command failed (1)
what can I do?
I donwngraded the R version. Actually Bioconductor requested to use version 3.5 for the devel.
Now devtools::install_github(repo = "BioinformaticsFMRP/TCGAbiolinksGUI.data",ref = "R_3.4)
should work.
It crashes when I try to open it. There are also several problems when I try to install it. I am using TCGAbiolingsGUI version 1.5.2 and TCGAbiolinks 2.7.6
edit: When it crashed this message appears in R: Error : package or namespace load failed for 'minfi' in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'C:/Users/Konstantinos/Documents/R/win-library/3.4/openssl/libs/x64/openssl.dll': `maximal number of DLLs reached...