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BioinformaticsLabAtMUN / Promotech

Machine-learning-based general bacterial promoter prediction tool.
GNU General Public License v3.0
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No module named ui.GUI #16

Open gcgloriachan opened 1 year ago

gcgloriachan commented 1 year ago

Hi Team,

After I have tried to run the genomic parse "python promotech.py -pg -ts 20000 -f RP/promotech_data/dataset/GCF_000021865.1_ASM2186v1_genomic.fasta -o results" I got a error that says "No module named ui.GUI' even though I have put a folder of the ui files in the same directory as the python script. Any ideas what might have caused this?:

"Traceback (most recent call last): File "promotech.py", line 5, in from ui.GUI import Promotech_UI ModuleNotFoundError: No module named 'ui.GUI'

BioinformaticsLabAtMUN commented 12 months ago

Hi,

You need to install the ui package https://pypi.org/project/ui/ and also make sure to clone the project.

fraseraj commented 8 months ago

Hi, I'm having an issue when trying to predict promoter sequences using the parsed sequence in whole-genome mode. The error message is below. I have checked the models directory and RF-HOT.model is in there. Thanks in advance!

Traceback (most recent call last): File "/home/frasera/Promotech/promotech.py", line 91, in threshold = args.threshold File "/home/frasera/Promotech/genome/process_genome.py", line 175, in predictGenomeSequences Path(model_path).stat().st_size / 1000000 File "/home/frasera/miniconda3/envs/promotech_env/lib/python3.6/pathlib.py", line 1158, in stat return self._accessor.stat(self) File "/home/frasera/miniconda3/envs/promotech_env/lib/python3.6/pathlib.py", line 387, in wrapped return strfunc(str(pathobj), *args) FileNotFoundError: [Errno 2] No such file or directory: 'models/RF-HOT.model'

pandaspa commented 6 months ago

Hi, I'm having an issue when trying to predict promoter sequences using the parsed sequence in whole-genome mode. The error message is below. I have checked the models directory and RF-HOT.model is in there. Thanks in advance!

Traceback (most recent call last): File "/home/frasera/Promotech/promotech.py", line 91, in threshold = args.threshold File "/home/frasera/Promotech/genome/process_genome.py", line 175, in predictGenomeSequences Path(model_path).stat().st_size / 1000000 File "/home/frasera/miniconda3/envs/promotech_env/lib/python3.6/pathlib.py", line 1158, in stat return self._accessor.stat(self) File "/home/frasera/miniconda3/envs/promotech_env/lib/python3.6/pathlib.py", line 387, in wrapped return strfunc(str(pathobj), *args) FileNotFoundError: [Errno 2] No such file or directory: 'models/RF-HOT.model'

I have same issue,too.Can you tell me how do you slove this?