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BioinformaticsLabAtMUN / Promotech

Machine-learning-based general bacterial promoter prediction tool.
GNU General Public License v3.0
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"promotech_mac_env" issue #3

Closed dplazas closed 2 years ago

dplazas commented 2 years ago

Hi! I tried to run your tool and had some issues. I use terminal (Mac 10.11.6), python 3.8.8, pip .

After installing the env (promotech_mac_env), got infinite messages like this "Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies...."

then I found this potential solution https://stackoverflow.com/questions/67081266/conda-yml-file-prompts-please-add-an-explicit-pip-dependency .....and added -pip to .yml file (as suggested). Ran it again and pip installations got stuck...I stopped it in some point (after more than2 hours) and tried the examples provided (e.g. python promotech.py -s -m RF-HOT -f examples/sequences/test.fasta -o results), and only get this message "Illegal instruction: 4" What's wrong? thank you in advance!

BioinformaticsLabAtMUN commented 2 years ago

Mac 10.11 is not supported. We have tested Promotech on Mac OS Big Sur V11.3. The operating system you are using (macOS 10.11 El Capitan) has not been supported by Apple (and thus most developers) since 2018.