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BiologicalRecordsCentre / BRCindicators

An R package for creating indicators from trends data
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MSI jobname parameter bounces #29

Closed larspett closed 5 years ago

larspett commented 5 years ago

When trying to set the jobname parameter of msi_tool via msi, msi_tool responds with an error saying that there multiple arguments for the jobname argument. I assume that the one I provide should overwrite the default one?

msi_out <- msi(grassland.data, plotbaseyear=2010, sebaseyear=2010, index_smooth="INDEX", jobname="Grassland")

Error in msi_tool(wd = dir, inputFile = "input.csv", jobname = "MSI_job", : formal argument "jobname" matched by multiple actual arguments

AugustT commented 5 years ago

I have found the issue. msi currently passes a jobname which confuses things when a user specifies one as the user supplied one is passed via the ellipsis, resulting in the jobname argument being passed twice.

AugustT commented 5 years ago

If you are using the msi function that the jobname is not so important since the results are returned directly to R.

AugustT commented 5 years ago

I am pulling in a fix, seems to work for me. Can you check for yourself and close this issue if it works.

larspett commented 5 years ago

Works fine now, thanks!