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BiomedSciAI / histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
GNU Affero General Public License v3.0
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Nuclei labels #18

Closed elliewith closed 2 years ago

elliewith commented 3 years ago

Thanks for your great package! I was wondering whether it is possible to return the nuclei labels e.g. inflammatory cells? I can't seem to see this option. Thank you

guillaumejaume commented 3 years ago

Hi, Thanks for your question. As the nuclei labels are dataset specific, we didn't include the classification head in the package, only the segmentation one. Guillaume