search

BiomedSciAI / histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
GNU Affero General Public License v3.0
235 stars 55 forks source link

Pretrained Weights for CellGraphModel not available #57

Open DanishSyedM opened 7 months ago

DanishSyedM commented 7 months ago

Hi, Whilst running cell_graph_explainer.py, I am facing issues in loading pretrained weights for the CellGraphModel - https://github.com/BiomedSciAI/histocartography/blob/5ec422092adbc2aae2cde3dbcbd4b28dca6685e2/histocartography/ml/models/cell_graph_model.py#L53C22-L53C38

Since we are trying to fetch this file named bracs_cggnn_3_classes_gin.pt, the URL doesn't work - https://github.com/BiomedSciAI/histocartography/blob/5ec422092adbc2aae2cde3dbcbd4b28dca6685e2/histocartography/ml/models/zoo.py#L11C6-L11C34

Can you please have a look at this? Thanks

holotrace commented 7 months ago

you can try this. https://github.com/BiomedSciAI/histocartography/issues/53#issuecomment-1819974593