BiomedicalMachineLearning / stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data
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"available_paths" not available #245

Closed QuinceyLv closed 10 months ago

QuinceyLv commented 1 year ago

Hi, I was using stlearn 0.4.12:

st.spatial.trajectory.pseudotime(adata_SME, eps=50, use_rep="X_pca", use_label = 'leiden', max_nodes = len(adata_SME.obs['leiden'].unique()))

and I checked adata_SME.uns['available_paths'], choosed some paths to perform st.spatial.trajectory.pseudotimespace_global() and got error.

企业微信截图_20230803161609

So what 'available_paths' means? or something went wrong when I process my data? Thanks.

duypham2108 commented 1 year ago

Can you try to install the GitHub version? I fixed it but have uploaded it yet