Closed QuinceyLv closed 10 months ago
Hi, I was using stlearn 0.4.12:
st.spatial.trajectory.pseudotime(adata_SME, eps=50, use_rep="X_pca", use_label = 'leiden', max_nodes = len(adata_SME.obs['leiden'].unique()))
and I checked adata_SME.uns['available_paths'], choosed some paths to perform st.spatial.trajectory.pseudotimespace_global() and got error.
So what 'available_paths' means? or something went wrong when I process my data? Thanks.
Can you try to install the GitHub version? I fixed it but have uploaded it yet
Hi, I was using stlearn 0.4.12:
st.spatial.trajectory.pseudotime(adata_SME, eps=50, use_rep="X_pca", use_label = 'leiden', max_nodes = len(adata_SME.obs['leiden'].unique()))
and I checked adata_SME.uns['available_paths'], choosed some paths to perform st.spatial.trajectory.pseudotimespace_global() and got error.
So what 'available_paths' means? or something went wrong when I process my data? Thanks.