st.spatial.trajectory.pseudotime convergence error

BiomedicalMachineLearning / stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data

Other

200 stars 26 forks source link

Closed meaksu closed 10 months ago

meaksu commented 1 year ago

Hi,

The pseudotime function is not converging for one of my samples. Do you know how this can be fixed?

Capture

duypham2108 commented 1 year ago

How many spots do you have in your dataset? You can try to reduce the number of components in the step you run PCA.