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BiomedicalMachineLearning / stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data
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Question abount integrating multiple spatial data with only spatial coordinates #274

Closed cynthier closed 10 months ago

cynthier commented 10 months ago

Hi, thank you so much for developing this useful tool.

I have the stereo-seq data with more than three replicates and I want to integate all of them to infer trajectory. Is it possible to change the coordinates according to my annotation without the images?

Thank you in advance!

duypham2108 commented 10 months ago

For the scope of this package, we don't support it. You can use some packages to align the spatial transcriptomic. Some of them will not require images

cynthier commented 10 months ago

@duypham2108 Thank you for your reply.