I just started trying your package out and have a question about the image_path parameter in create_stlearn.
I tried importing everything from a seurat object and everything is working except for the image_path. It does not allign with the spots and instead the image is just at top left corner.
Thus, I wanted to ask how create_stlearn alligns the image to the spots? What format or information does it need to correctly allign spots to image?
If I missed this information in the documentation I apologize and would be thankful if you send me a link or screenshot with the information.
Hi stlearn team.
I just started trying your package out and have a question about the image_path parameter in create_stlearn. I tried importing everything from a seurat object and everything is working except for the image_path. It does not allign with the spots and instead the image is just at top left corner.
Thus, I wanted to ask how create_stlearn alligns the image to the spots? What format or information does it need to correctly allign spots to image?
If I missed this information in the documentation I apologize and would be thankful if you send me a link or screenshot with the information.
Thank you!