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BioplatformsAustralia / bpaotu

OTU database access for the Australian Microbiome
GNU Affero General Public License v3.0
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Better text for 'Taxonomy filter' section in info.txt #210

Closed hou098 closed 2 years ago

hou098 commented 2 years ago
produces a zip file containing `info.txt` ``` Australian Microbiome OTU Database - tabular export --------------------------------------------------- Amplicon filter: amplicon is '27f519r_bacteria' Taxonomy filter: taxonomy_source is 'T2 M2' r1 is 'T2_d__Bacteria' ``` Replace `taxonomy_source` with `Taxonomy` Replace r1…r8 with actual rank names. See https://github.com/BioplatformsAustralia/bpaotu/blob/66f7dea42fe7c3314eb0dd47a30dd6eb50cf4907/bpaotu/bpaotu/query.py#L620
hou098 commented 2 years ago

Work in progress. Now looks like this

Australian Microbiome OTU Database - tabular export
---------------------------------------------------

Amplicon filter:
  amplicon is '1391fEukBr_v9_eukaryote'

Taxonomy filter:
  Taxonomy is 'PR2v4140 NN'
  Kingdom is 'k__Bacteria'
  Supergroup is 'sg__Terrabacteria'
  Division is 'd__Cyanobacteria'
  Class is 'c__Cyanophyceae'
  Order is 'o__Chroococcales'
  Family is 'f__Chroococcales_X'
  Genus is 'g__Gloeothece'
  Species is 's__Gloeothece_membranacea'