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BioplatformsAustralia / bpaotu

OTU database access for the Australian Microbiome
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Add metadata download option for metagenome search results #248

Closed Smithmania closed 1 year ago

Smithmania commented 1 year ago

Can we add functionality to download metadata for samples returned from the metagenome searches - we do this for the amplicons. Not sure where the best place for the download option is it could be in the same spot as we do for the amplicons or it could be included as a checkbox in the metagenome fetcher

hou098 commented 1 year ago

Do you mean something like the "Download Contextual Data only (CSV)" button?

Smithmania commented 1 year ago

yep something like that or as part of your bulk download packet - not sure what makes most sense from a user perspective if it came as part of the download packet by default (with the option of adding other files of interest) all the data would be together for the one search

On 1 Nov 2022, at 4:33 pm, David Houlder @.***> wrote:

Do you mean something like the "Download Contextual Data only (CSV)" button?

— Reply to this email directly, view it on GitHub https://github.com/BioplatformsAustralia/bpaotu/issues/248#issuecomment-1298050885, or unsubscribe https://github.com/notifications/unsubscribe-auth/ALSSEDIWIU7WOLIPBBYG2E3WGCTSJANCNFSM6AAAAAARTTWY4M. You are receiving this because you authored the thread.

hou098 commented 1 year ago

I think the the best option might be to implement the "Download Contextual Data only (CSV)" button on the metagenome tab too.That would maintain consistency with the amplicon search interface and behaviour — see https://en.wikipedia.org/wiki/Principle_of_least_astonishment

hou098 commented 1 year ago

Implemented in https://github.com/BioplatformsAustralia/bpaotu/tree/1.36.0