Bishop-Laboratory RLBase-data issues

Bishop-Laboratory / RLBase-data

Protocol for building/updating RLBase

MIT License

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issues

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Need to reprocess RLRanges / RLSeq HTML and reupload

#22 millerh1 opened 2 years ago
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Workaround for plant genomes

#21 millerh1 opened 2 years ago
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Keep summit information when creating rl regions

#18 millerh1 opened 3 years ago
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Need to modify genome browser session such that "Mean" is used

#17 millerh1 opened 3 years ago
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Need to obtain coverage tracks with library size normalization

#16 millerh1 opened 3 years ago
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Mistake in data entry of Tissue for HT1080 cell lines

#15 millerh1 opened 3 years ago
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Need also to find variable R-loop regions (should allow as low as 5% region cutoff)

#14 millerh1 opened 3 years ago
1
Add in new data (Late 2021 update)

#13 millerh1 opened 3 years ago
1
`confidence_level` in `rlregions_meta` unclear.

#12 millerh1 closed 3 years ago
1
`avgNumPeaks` and `medNumPeaks` not showing up in `RLHub::rlregions_meta` currently

#11 millerh1 closed 3 years ago
1
num_total_peaks and num_tested_peaks are backwards in feat_enrich_samples

#10 millerh1 opened 3 years ago
0
Need to add in the RLBPs scripts (remove from .gitignore)

#9 millerh1 opened 3 years ago
1
Need intergenic regions in `Transcript_Features` database

#8 millerh1 opened 3 years ago
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Need to change/clean up DB names

#7 millerh1 closed 3 years ago
1
DBs to remove

#6 millerh1 opened 3 years ago
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Improvements to selectSamples.R

#5 millerh1 closed 3 years ago
1
Need to construct alternative RLRegions that with only S9.6 or RNH

#4 millerh1 closed 3 years ago
2
Get the new annotation collection

#3 millerh1 closed 3 years ago
1
Create LICENSE

#2 millerh1 closed 3 years ago
0
Need to write workflow for generating all datasets

#1 millerh1 closed 3 years ago
1
Need to refine RLoop table analysis to be more permissive

#20 millerh1 opened 3 years ago
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Need to refine peaks on the RLoop table analysis by strand

#19 millerh1 opened 3 years ago
0