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Bishop-Laboratory / RLPipes

RLPipes: A standardized R-loop-mapping pipeline.
https://anaconda.org/bioconda/rlpipes
MIT License
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Needs macs2 called without input regardless of whether input is available. This is for QC reasons... #50

Closed millerh1 closed 3 years ago

millerh1 commented 3 years ago

To make QC analysis comparable between different datasets, we should be calling MACS2 peaks without an input control in every case. We should also add these options: 

"--broad-cutoff .01 -q .01 --broad -g " + str(effective_genome_size)