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Bishop-Laboratory / RLPipes

RLPipes: A standardized R-loop-mapping pipeline.
https://anaconda.org/bioconda/rlpipes
MIT License
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ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory #82

Closed millerh1 closed 2 years ago

millerh1 commented 2 years ago

Run into this problem when doing default bioconda install:

(base) millerh1@DESKTOP-D6G0FNB:~/RLPipes$ conda activate rlpipes2
(rlpipes2) millerh1@DESKTOP-D6G0FNB:~/RLPipes$ python
Python 3.9.10 | packaged by conda-forge | (main, Feb  1 2022, 21:24:37)
[GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import pysam
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/millerh1/miniconda3/envs/rlpipes2/lib/python3.9/site-packages/pysam/__init__.py", line 5, in <module>
    from pysam.libchtslib import *
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory

For the bioconda install in a fresh env, it's using pysam=0.9.1

This is fixed by upgrading to pysam=0.17.0

(rlpipes2) millerh1@DESKTOP-D6G0FNB:~/RLPipes$ python
Python 3.9.10 | packaged by conda-forge | (main, Feb  1 2022, 21:24:11)
[GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import pysam
>>>

Recommended fix: find and pin minimal version for bioconda recipe.

millerh1 commented 2 years ago

Fixed by pinning reqs to pysam>=0.17.0