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Bishop-Laboratory
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RLPipes
RLPipes: A standardized R-loop-mapping pipeline.
https://anaconda.org/bioconda/rlpipes
MIT License
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Needs total RNA-Seq bam files for testing
#43
millerh1
closed
3 years ago
1
Needs mm9 bam files for DRIP-Seq testing
#42
millerh1
closed
3 years ago
0
Needs hg19 bam files for DRIP-Seq testing
#41
millerh1
closed
3 years ago
0
Needs test bam files for R-ChIP and input
#40
millerh1
closed
3 years ago
0
Needs test bam files for qDRIP-Seq and input
#39
millerh1
closed
3 years ago
0
Needs test bam files for typical DRIP Seq and input
#38
millerh1
closed
3 years ago
0
Refactor to make R-based functions a package that is loaded by the command-line scripts instead of part of the scripts
#37
millerh1
closed
3 years ago
1
Port the R input script to a robust command line framework in python
#36
millerh1
closed
3 years ago
1
See if you can break it from the perspective of user input
#35
millerh1
closed
3 years ago
0
Needs a module that takes a set of peaks in GRanges format as input and annotates them
#33
millerh1
closed
3 years ago
1
Create the gh_pages branch and initialize documentation website
#32
millerh1
opened
3 years ago
0
Lacks documentation for correlation analysis along with usage information.
#31
millerh1
closed
3 years ago
1
Lacks tests for correlation analysis
#30
millerh1
closed
3 years ago
1
Write the documentation
#29
millerh1
closed
3 years ago
0
Develop the quality models
#28
millerh1
closed
3 years ago
0
Conda build
#27
millerh1
closed
3 years ago
0
Refactor for install
#26
millerh1
closed
3 years ago
0
Add .circleci/config.yml
#25
millerh1
closed
3 years ago
0
Init ci
#24
millerh1
closed
3 years ago
0
Minor bug fix
#23
millerh1
closed
3 years ago
0
Need to test for GitHub workflows
#22
millerh1
closed
3 years ago
0
bwa-mem2 dependancy not found
#21
dmontemayor
closed
3 years ago
1
Cannot find process_input.R file when parsing input
#20
dmontemayor
closed
3 years ago
1
Development
#19
millerh1
closed
3 years ago
0
Configure tests
#18
millerh1
closed
3 years ago
0
Create RSeq - Copy
#17
millerh1
closed
3 years ago
0
Development
#16
millerh1
closed
3 years ago
0
Write the manuscript
#15
millerh1
closed
3 years ago
0
Update README.md
#14
millerh1
closed
3 years ago
1
Need for combined peak score in final_peaks.bed
#13
millerh1
closed
3 years ago
1
Finished module
#12
millerh1
closed
3 years ago
0
Updated RSeq script
#10
millerh1
closed
3 years ago
0
R-loop conservation analysis
#9
millerh1
closed
3 years ago
1
Snakemake refactor for multi-sample processing
#8
millerh1
closed
3 years ago
0
Support for bisDRIP/foot-printing/SMRF-Seq
#7
millerh1
opened
3 years ago
0
Sample binary classifier model R&D
#6
millerh1
closed
3 years ago
0
Sample PASS/FAIL label assignment
#5
millerh1
closed
3 years ago
0
Quality score model R&D
#4
millerh1
closed
3 years ago
0
Support for bigWig/Peak file input
#3
millerh1
closed
3 years ago
1
remove extra files
#2
millerh1
closed
4 years ago
0
hello world! dev branch
#1
millerh1
closed
4 years ago
0
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