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BjornFJohansson / pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Cutsite pairs rebased #199

Closed manulera closed 5 months ago

manulera commented 5 months ago

Implements #157, and few bug fixes (see commit text)

manulera commented 5 months ago

Big merge is ready 🚀🚀🚀🚀🚀🚀🚀🚀

codecov[bot] commented 5 months ago

Codecov Report

Attention: 6 lines in your changes are missing coverage. Please review.

Comparison is base (f17e73e) 92.95% compared to head (c9b003d) 93.01%.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199/graphs/tree.svg?width=650&height=150&src=pr&token=8gKFpo7HAl&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson)](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) ```diff @@ Coverage Diff @@ ## master #199 +/- ## ========================================== + Coverage 92.95% 93.01% +0.06% ========================================== Files 39 39 Lines 3688 3739 +51 Branches 553 562 +9 ========================================== + Hits 3428 3478 +50 - Misses 214 216 +2 + Partials 46 45 -1 ``` | [Files](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) | Coverage Δ | | |---|---|---| | [src/pydna/amplify.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2FtcGxpZnkucHk=) | `98.65% <100.00%> (+0.01%)` | :arrow_up: | | [src/pydna/utils.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL3V0aWxzLnB5) | `93.08% <97.61%> (+1.15%)` | :arrow_up: | | [src/pydna/dseq.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2RzZXEucHk=) | `97.01% <97.33%> (+0.80%)` | :arrow_up: | | [src/pydna/dseqrecord.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/199?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2RzZXFyZWNvcmQucHk=) | `95.19% <90.32%> (-0.83%)` | :arrow_down: |