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BjornFJohansson / pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Basic implementation of ViennaRNA for prediction of primer dimers and secondary structure #268

Open dgruano opened 1 month ago

dgruano commented 1 month ago

We could use https://github.com/ViennaRNA/ViennaRNA to score the designed primers for secondary structure and thr probability of producing primer dimers.

hiyama341 commented 1 month ago

Have used primer3 for this as well, don't if it is worse or better. But agree, it would be nice to have as attributes to the primers.

BjornFJohansson commented 1 month ago

See #229