BjornFJohansson / pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Ci hooks #276

Closed manulera closed 1 month ago

codecov[bot] commented 1 month ago

Codecov Report

Attention: Patch coverage is 83.79205% with 53 lines in your changes missing coverage. Please review.

Project coverage is 93.57%. Comparing base (e32977f) to head (44c16a7). Report is 1 commits behind head on master.

Files with missing lines Patch % Lines
src/pydna/seq.py 61.70% 18 Missing :warning:
src/pydna/seqrecord.py 54.16% 11 Missing :warning:
src/pydna/dseqrecord.py 60.00% 7 Missing and 1 partial :warning:
src/pydna/parsers.py 89.36% 3 Missing and 2 partials :warning:
src/pydna/dseq.py 94.66% 2 Missing and 2 partials :warning:
src/pydna/readers.py 62.50% 1 Missing and 2 partials :warning:
src/pydna/tm.py 87.50% 1 Missing and 1 partial :warning:
src/pydna/utils.py 94.28% 2 Missing :warning:
Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276/graphs/tree.svg?width=650&height=150&src=pr&token=8gKFpo7HAl&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson)](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) ```diff @@ Coverage Diff @@ ## master #276 +/- ## ========================================== + Coverage 93.00% 93.57% +0.57% ========================================== Files 40 40 Lines 3744 3909 +165 Branches 562 585 +23 ========================================== + Hits 3482 3658 +176 + Misses 217 199 -18 - Partials 45 52 +7 ``` | [Files with missing lines](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) | Coverage Δ | | |---|---|---| | [src/pydna/\_\_init\_\_.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL19faW5pdF9fLnB5) | `90.10% <100.00%> (+0.82%)` | :arrow_up: | | [src/pydna/amplify.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Famplify.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2FtcGxpZnkucHk=) | `98.65% <100.00%> (ø)` | | | [src/pydna/assembly.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Fassembly.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2Fzc2VtYmx5LnB5) | `97.59% <100.00%> (+0.02%)` | :arrow_up: | | [src/pydna/common\_sub\_strings.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Fcommon_sub_strings.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2NvbW1vbl9zdWJfc3RyaW5ncy5weQ==) | `100.00% <100.00%> (ø)` | | | [src/pydna/crispr.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Fcrispr.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2NyaXNwci5weQ==) | `87.23% <ø> (ø)` | | | [src/pydna/design.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Fdesign.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2Rlc2lnbi5weQ==) | `97.51% <100.00%> (+0.31%)` | :arrow_up: | | [src/pydna/myenzymes.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Fmyenzymes.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL215ZW56eW1lcy5weQ==) | `100.00% <100.00%> (ø)` | | | [src/pydna/tm.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Ftm.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL3RtLnB5) | `96.92% <87.50%> (-3.08%)` | :arrow_down: | | [src/pydna/utils.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Futils.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL3V0aWxzLnB5) | `93.11% <94.28%> (+0.02%)` | :arrow_up: | | [src/pydna/readers.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree&filepath=src%2Fpydna%2Freaders.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL3JlYWRlcnMucHk=) | `80.00% <62.50%> (-20.00%)` | :arrow_down: | | ... and [5 more](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) | | ... and [8 files with indirect coverage changes](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/276/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson)