Issue 270

[manulera]

cc @BjornFJohansson

Closes #270 with what we discussed:

• Add circular optional argument to assembly_fragments
• Make assembly_fragments when circular=True do the same thing as circular_assembly_fragments.
• Update circular_assembly_fragments code to call assembly_fragments with circular=True
• Add deprecation notice to circular_assembly_fragments

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 93.63%. Comparing base (f063c40) to head (0f15ccd). Report is 6 commits behind head on dev_bjorn.

Additional details and impacted files

[](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/301?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) ```diff @@ Coverage Diff @@ ## dev_bjorn #301 +/- ## ============================================= + Coverage 93.60% 93.63% +0.03% ============================================= Files 40 40 Lines 3922 3926 +4 Branches 588 589 +1 ============================================= + Hits 3671 3676 +5 + Misses 199 198 -1 Partials 52 52 ``` | [Files with missing lines](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/301?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson) | Coverage Δ | | |---|---|---| | [src/pydna/design.py](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/301?src=pr&el=tree&filepath=src%2Fpydna%2Fdesign.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson#diff-c3JjL3B5ZG5hL2Rlc2lnbi5weQ==) | `97.57% <100.00%> (+0.06%)` | :arrow_up: | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/BjornFJohansson/pydna/pull/301/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Bj%C3%B6rn+Johansson)

[manulera]

I have added a few more things:

• Closes #269 by adding an example notebook for primer design, which was still missing.
• A few extra tests for primer design