BjornFJohansson / pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Bump pyparsing from 3.1.2 to 3.1.4 #308

Closed dependabot[bot] closed 1 week ago

dependabot[bot] commented 1 month ago

Bumps pyparsing from 3.1.2 to 3.1.4.

Changelog

Sourced from pyparsing's changelog.

Version 3.1.4 - August, 2024

  • Fixed a regression introduced in pyparsing 3.1.3, addition of a type annotation that referenced re.Pattern. Since this type was introduced in Python 3.7, using this type definition broke Python 3.6 installs of pyparsing 3.1.3. PR submitted by Felix Fontein, nice work!

Version 3.1.3 - August, 2024

  • Added new Tag ParserElement, for inserting metadata into the parsed results. This allows a parser to add metadata or annotations to the parsed tokens. The Tag element also accepts an optional value parameter, defaulting to True. See the new tag_metadata.py example in the examples directory.

    Example:

      # add tag indicating mood
      end_punc = "." | ("!" + Tag("enthusiastic")))
      greeting = "Hello" + Word(alphas) + end_punc
    

    result = greeting.parse_string("Hello World.") print(result.dump())

    result = greeting.parse_string("Hello World!") print(result.dump())

    prints:

      ['Hello', 'World', '.']
    

    ['Hello', 'World', '!']

    • enthusiastic: True
  • Added example mongodb_query_expression.py, to convert human-readable infix query expressions (such as a==100 and b>=200) and transform them into the equivalent query argument for the pymongo package ({'$and': [{'a': 100}, {'b': {'$gte': 200}}]}). Supports many equality and inequality operators - see the docstring for the transform_query function for more examples.

  • Fixed issue where PEP8 compatibility names for ParserElement static methods were not themselves defined as staticmethods. When called using a ParserElement instance, this resulted in a TypeError exception. Reported by eylenburg (#548).

  • To address a compatibility issue in RDFLib, added a property setter for the ParserElement.name property, to call ParserElement.set_name.

  • Modified ParserElement.set_name() to accept a None value, to clear the defined name and corresponding error message for a ParserElement.

  • ... (truncated)

    Commits
    • b846e4a Prep for 3.1.4 release
    • 9bd2356 Add Python 3.6 to CI (#566)
    • ee50a19 Add Tag notes to HowToUsePyparsing.rst
    • 3ffc3ef Fix typo
    • e5e97f7 Add mongodb_query_expression.py to examples; updated 0README.html and test_ex...
    • 10cef98 Add Tag ParserElement class
    • cf41d90 Prep for 3.1.3 release
    • d7c163c Some minor code changes in chemical_formulas.py
    • eb56030 Various code cleanups
    • a9e7d47 Added name property setter, and enhanced set_name() to accept a None value to...
    • Additional commits viewable in compare view


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    dependabot[bot] commented 4 weeks ago

    Dependabot couldn't find the branch dev_bjorn. Because of this, Dependabot cannot update this pull request.

    dependabot[bot] commented 1 week ago

    OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

    If you change your mind, just re-open this PR and I'll resolve any conflicts on it.