BjornFJohansson pydna issues

BjornFJohansson / pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Other

166 stars 45 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Assembly module error

#73 surgebiswas closed 3 years ago
1
Add missing utf8-encodings in dseqrecord

#72 ITS-Account closed 3 years ago
0
Entering β in the description of a Dseqrecord causes an exception when using the write method

#71 ITS-Account closed 3 years ago
9
[3.1.3] Biopython 1.7.9 breaks restriction digestion

#69 marcus-r-kelly closed 3 years ago
3
cSEGUID Collision

#68 ghost closed 3 years ago
1
Broken Compatibility with Biopython w/r/t Dseq.cut

#67 marcus-r-kelly closed 4 years ago
4
Better installation instructions

#66 BjornFJohansson opened 4 years ago
0
conda package conflicts with python 3.8

#65 shenker closed 4 years ago
2
Minimal primer design error

#64 mcrone closed 4 years ago
1
Small modifications to allow for extra long LOCUS names to be handled…

#63 harijay closed 4 years ago
0
Fix/issue#61 DseqRecord.features on slice

#62 ghost closed 4 years ago
0
Bug in DseqRecord.features on slicing

#61 ghost closed 4 years ago
2
Fix problem with feature locations when 3' sticky ends are involved

#60 mountainpenguin closed 4 years ago
3
Assembly example from source code gives "AttributeError: 'MultiDiGraph' object has no attribute 'node'" error

#59 harijay closed 5 years ago
2
pydna.gel not work with pycharm editor

#58 mohamedmoez1983 closed 1 year ago
2
Corrupted file or something?

#57 willsharpless closed 5 years ago
4
Reverse() & fill_in() edit.

#56 willsharpless closed 4 years ago
4
Undesirable spaced letters when naming features and listing them

#55 willsharpless closed 5 years ago
3
Pictures in the docs, is this possible to print:

#54 willsharpless closed 1 year ago
5
Is there a way to upper() a sequence?

#53 willsharpless closed 4 years ago
6
SeqRecord has no attribute ...

#52 willsharpless closed 5 years ago
3
problem with cut when cutsite on nucleotide zero.

#51 picousse closed 4 years ago
6
Including in Biopython?

#50 photocyte closed 1 year ago
1
Question: Is pydna.assembly deterministic?

#49 jlerman44 closed 5 years ago
17
plasmid with feature crossing the ori

#48 picousse closed 6 years ago
5
Preserve features by default in Dseqrecord.reverse_complement().

#47 glebkuznetsov closed 6 years ago
4
reading tables with python

#46 BjornFJohansson closed 6 years ago
0
Use UTF-8 when reading __init__.py.

#45 cbrueffer closed 6 years ago
2
pixel to dimesionless

#44 andrewdavis3 closed 7 years ago
3
Gel: DimensionalityError: Cannot convert from 'pixel' to 'dimensionless'

#43 klprint closed 7 years ago
5
Not working after pip installation

#42 klprint closed 7 years ago
6
_multiply_circular fails with splitted features

#41 santirdnd closed 7 years ago
6
fuse primer_design function and Amplicon class

#40 BjornFJohansson closed 5 years ago
0
Motivations for pydna

#39 BjornFJohansson opened 7 years ago
0
Create an automatic annotation function

#38 BjornFJohansson opened 7 years ago
4
myprimers return SeqRecord and not pydna.primer.Primer objects

#37 BjornFJohansson closed 7 years ago
1
Add primers to list

#36 BjornFJohansson closed 2 years ago
2
Adopt configobj for reading and writing the pydna.ini file

#35 BjornFJohansson opened 7 years ago
1
Primers designed by cloning_primers can exceed maxlength

#34 hsiaut closed 7 years ago
9
pypandoc error during install with pip

#33 mcrone closed 7 years ago
4
create a decorator for the hashing function

#32 BjornFJohansson closed 7 years ago
1
Add a Codacy badge to README.md

#31 codacy-badger closed 7 years ago
1
Create way to add config values to pydna.ini

#30 BjornFJohansson closed 5 years ago
1
Clean up the downloads.py module

#29 BjornFJohansson closed 7 years ago
2
The Assembly class should refresh if sequence fragment metadata is changed.

#28 BjornFJohansson closed 8 years ago
1
Roadmap ideas

#27 BjornFJohansson opened 8 years ago
15
Simplify assembly_primer API

#26 BjornFJohansson closed 7 years ago
2
Unify Primer classes

#25 BjornFJohansson closed 7 years ago
1
master

#24 bruno2git closed 7 years ago
0
Py3

#23 bruno2git closed 5 years ago
0

Previous Next