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BlanchetteLab / HIFI

Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
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callPeaks get killed #7

Open brzeli opened 4 years ago

brzeli commented 4 years ago

Hello, It could really be a very usefull app. Unfortunately, when I try callPeaks on the provided test datafile, the program get killed. I tried to compile with different optimization flags, but then it crashed even earlier. The accompanying python scripts and HIFI main program worked without issues. The command I used was copy&pasted from readme:

src/callPeaks examples_output/Rao_GM12878.hg19.chr9_example.chr9_chr9.RF.HIFI_MRF.tsv 50000 100000 chr9 examples/hg19.HindIII_fragments.bed 20000

And the response was:

Reading RF fileAllocating memory Done allocating memory Reading matrix...Looking for badrows... Nb bad = 0 Calculating E matrix Calculating cumulative matrix Killed

I use Ubuntu 18.04, 15.6Gb RAM

I hope you could resolve this issues. Best regards.