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BlishLab / scriabin

Analysis of cell-cell communication at single-cell resolution
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Made fixes to allow for using AssembleInteractionGraphs with by = "weighted" #4

Open austinv11 opened 2 years ago

austinv11 commented 2 years ago

When trying to use by="weighted" there are several issues preventing me from getting AssembleInteractionGraphs to run without crashing. The first change I made was to RankLigandTargets as it would often have dimension mismatches that would lead to crashes.

I also had to adjust AssembleInteractionGraphs to allow for additional arguments to be passed to it. Most notable, nichenet_results as it is a required argument for BuildWeightedInteraction

Feel free to correct me if there are issues with the changes.