Blosberg / nanopiper

(long read) fastq input to final report
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break-up GRL-read conversion chunks #21

Open Blosberg opened 5 years ago

Blosberg commented 5 years ago

currently the execution of rule make GRL_reads demands too much memory and frequently crashes. We should run the rule once for each chunk, and then combine them only afterwards.

Combining GRL objects afterwards will be necessary anyway when we allow for merged runs.