BlueBrain NeuroM issues

BlueBrain / NeuroM

Neuronal Morphology Analysis Tool

https://neurom.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

102 stars 55 forks source link

issues

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Prepare for Python 3.13, fix issues with numpy>2 & matplotlib,

#1131 eleftherioszisis closed 1 week ago
1
test_tree3d fails with Python 3.13

#1130 penguinpee opened 1 week ago
3
Fix linting errors

#1129 eleftherioszisis closed 4 months ago
1
Reduce soma volume measurement test precision

#1128 eleftherioszisis closed 3 months ago
1
Allow axon-carrying-denrite with fork axon subtrees

#1127 eleftherioszisis closed 4 months ago
1
One test failing with 4.0.0: `Arrays are not almost equal to 5 decimals`

#1126 sanjayankur31 closed 3 months ago
7
axon-carrying-dendrite where a dendrite ends on axonal fork

#1125 eleftherioszisis closed 4 months ago
2
Clean doc warnings

#1124 mgeplf closed 3 months ago
1
4.0.0: cannot build documentation

#1123 kloczek closed 3 months ago
6
Fix mpl.cm.get_cmap deprecation

#1122 eleftherioszisis closed 5 months ago
1
AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap' with Matplotlib 3.9

#1121 QuLogic closed 5 months ago
2
Decouple Morphology constructor from io

#1120 eleftherioszisis closed 5 months ago
1
Some proposals

#1119 adrien-berchet closed 5 months ago
2
Move soma methods to functions

#1118 eleftherioszisis closed 5 months ago
1
Add __version__ attribute

#1117 adrien-berchet closed 5 months ago
1
Fix NeuriteType for Python 3.12.3

#1116 adrien-berchet closed 5 months ago
1
Add check for overlapping points in neurites

#1115 adrien-berchet closed 5 months ago
2
Make has_no_back_tracking() compatible with generate_annotation()

#1114 adrien-berchet closed 5 months ago
2
Add has_no_back_tracking function

#1113 adrien-berchet closed 5 months ago
2
Add back_tracking_segments() which is then called by is_back_tracking

#1112 adrien-berchet closed 5 months ago
2
V4

#1111 mgeplf closed 4 months ago
2
Unsupported section type: 0

#1110 superwhat1 opened 6 months ago
4
CI: Add CodeCov token

#1109 adrien-berchet closed 7 months ago
0
Add check-packaging

#1108 eleftherioszisis closed 6 months ago
1
fix location of readme, update links for badges and banner

#1107 mgeplf closed 8 months ago
1
github action: fix var name for sdist upload

#1106 mgeplf closed 8 months ago
0
fix sdist so pypi upload can happen

#1105 mgeplf closed 8 months ago
1
Replace pkg_resources with importlib in docs

#1104 eleftherioszisis closed 8 months ago
2
3.2.7: use of `pkg_resources` is deprecated

#1103 kloczek closed 8 months ago
2
do not use master for github actions

#1101 mgeplf closed 8 months ago
1
update contributors to match git logs

#1100 mgeplf closed 8 months ago
0
try updating .zenodo.json

#1099 mgeplf closed 8 months ago
0
Add testing for python3.12

#1098 eleftherioszisis closed 8 months ago
1
load_morphology(path).sections throws error

#1097 eleftherioszisis opened 8 months ago
3
Add testing of example scripts (#1041)

#1096 eleftherioszisis closed 8 months ago
0
Fix tutorial & add tutorial testing

#1095 eleftherioszisis closed 8 months ago
1
Add proper spacing in morph_stats docstring config path

#1094 eleftherioszisis closed 8 months ago
0
Fix warnings in tests

#1093 eleftherioszisis closed 8 months ago
1
Remove pyXX prefix for lint, docs, and coverage

#1092 eleftherioszisis closed 8 months ago
2
fix examples after move to v3

#1091 mgeplf closed 8 months ago
1
example with "soma_radii" is outdated.

#1090 jdcourcol closed 8 months ago
0
update soma for new morphio 3.3.7 error

#1089 mgeplf closed 9 months ago
1
modernize to pyproject.toml

#1088 mgeplf closed 8 months ago
1
set readthedocs python to a version we know we have morphio wheels for

#1087 mgeplf closed 10 months ago
0
Add Zenodo author list

#1086 eleftherioszisis closed 10 months ago
1
Cannot install NeuroM on macOSX.

#1085 marwan-abdellah closed 8 months ago
4
Replace PyPI mock test dependency with unittest.mock

#1084 musicinmybrain closed 1 year ago
2
Remove a few useless shebang lines

#1083 musicinmybrain closed 1 year ago
2
Remove py37, add py311, and fix Rectangle kwarg error

#1082 eleftherioszisis closed 1 year ago
5