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BlueBrain / NeuroMorphoVis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
https://portal.bluebrain.epfl.ch/
GNU General Public License v3.0
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How can I find these neuron swc files? #176

Closed wyzwzz closed 1 year ago

wyzwzz commented 1 year ago

I am very interested in these neurons in this picture, and I want to get its morphology files (swc files), but I can't retrieve the relevant files in neuromorph.org, can you tell me where and how to find these files? Thank you! neurons

marwan-abdellah commented 1 year ago

@wyzwzz These morphologies are reconstructed by the Blue Brain Project. I would assume that similar ones can be found online here: https://neuromorpho.org/bylab.jsp and then search for markram. If you cannot find them, please let me know and then I can make a request to share the morphologies with you. Thanks,

wyzwzz commented 1 year ago

Thank you for your answer! But I have another question, in the picture, the name of a neuron is consisted of "Layer(L1, L2...)" and "short name(DAC, HAC, LAC...)", and I have found that the short name is defined by the neurobiologist, but I don't know how to map the neurons listed in the "https://neuromorpho.org/bylab.jsp" to the name as shown in the picture, maybe you can provide a list like "L1-DAC : NeuroMorpho.Org ID". Thank you very much!