Installer broken by h5py, webbrowser, et al

[cornpo]

I did git clone, then; ./setup.py --prefix=../neuro/ --verbose --blender-version 3.1

Installing collected packages: pytz, tzdata, six, numpy, python-dateutil, pandas ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. botocore 1.31.68 requires urllib3<2.1,>=1.25.4; python_version >= "3.10", which is not installed. Successfully installed numpy-1.26.1 pandas-2.1.2 python-dateutil-2.8.2 pytz-2023.3.post1 six-1.16.0 tzdata-2023.3 INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed Pillow

• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed Pillow Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com Collecting Pillow Downloading Pillow-10.1.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.5 kB) Downloading Pillow-10.1.0-cp310-cp310-manylinux_2_28_x86_64.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 7.4 MB/s eta 0:00:00 Installing collected packages: Pillow Successfully installed Pillow-10.1.0 INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed webbrowser
• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed webbrowser Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com ERROR: Could not find a version that satisfies the requirement webbrowser (from versions: none) ERROR: No matching distribution found for webbrowser INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed tqdm
• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed tqdm Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com Collecting tqdm Downloading tqdm-4.66.1-py3-none-any.whl.metadata (57 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.6/57.6 kB 1.8 MB/s eta 0:00:00 Downloading tqdm-4.66.1-py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 7.8 MB/s eta 0:00:00 Installing collected packages: tqdm Successfully installed tqdm-4.66.1 INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed morphio
• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed morphio Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com Collecting morphio Downloading MorphIO-3.3.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.5 kB) Collecting numpy>=1.14.1 (from morphio) Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 1.6 MB/s eta 0:00:00 Downloading MorphIO-3.3.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.7/2.7 MB 9.2 MB/s eta 0:00:00 Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 10.3 MB/s eta 0:00:00 Installing collected packages: numpy, morphio Successfully installed morphio-3.3.6 numpy-1.26.1 INSTALL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed h5py==2.10.0

• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install --ignore-installed h5py==2.10.0 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com Collecting h5py==2.10.0 Downloading h5py-2.10.0.tar.gz (301 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 301.1/301.1 kB 3.2 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting numpy>=1.7 (from h5py==2.10.0) Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 20.6 MB/s eta 0:00:00 Collecting six (from h5py==2.10.0) Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 10.3 MB/s eta 0:00:00 Building wheels for collected packages: h5py Building wheel for h5py (setup.py) ... error error: subprocess-exited-with-error

  × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [66 lines of output] /home/cornpop/.local/lib/python3.10/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-310 creating build/lib.linux-x86_64-cpython-310/h5py copying h5py/version.py -> build/lib.linux-x86_64-cpython-310/h5py copying h5py/ipy_completer.py -> build/lib.linux-x86_64-cpython-310/h5py copying h5py/highlevel.py -> build/lib.linux-x86_64-cpython-310/h5py copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-cpython-310/h5py copying h5py/init.py -> build/lib.linux-x86_64-cpython-310/h5py creating build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/vds.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/selections.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/group.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/filters.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/files.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/dims.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/compat.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/base.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl copying h5py/_hl/init.py -> build/lib.linux-x86_64-cpython-310/h5py/_hl creating build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_threads.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_group.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_file.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_deprecation.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_base.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/common.py -> build/lib.linux-x86_64-cpython-310/h5py/tests copying h5py/tests/init.py -> build/lib.linux-x86_64-cpython-310/h5py/tests creating build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds copying h5py/tests/test_vds/init.py -> build/lib.linux-x86_64-cpython-310/h5py/tests/test_vds running build_ext Loading library to get version: libhdf5.so error: libhdf5.so: cannot open shared object file: No such file or directory [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for h5py Running setup.py clean for h5py Failed to build h5py ERROR: Could not build wheels for h5py, which is required to install pyproject.toml-based projects

  • Installing: BBP dependencies
• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ bluepy Looking in indexes: https://bbpteam.epfl.ch/repository/devpi/simple/, https://pypi.ngc.nvidia.com ERROR: Could not find a version that satisfies the requirement bluepy (from versions: none) ERROR: No matching distribution found for bluepy
• SHELL: ../neuro//bbp-blender-3.1/blender-bbp/3.1/python/bin//pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ bluepy_configfile Looking in indexes: https://bbpteam.epfl.ch/repository/devpi/simple/, https://pypi.ngc.nvidia.com ERROR: Could not find a version that satisfies the requirement bluepy_configfile (from versions: none) ERROR: No matching distribution found for bluepy_configfile
• Cleaning
• SHELL: rm ../neuro//bbp-blender-3.1/blender.tar.xz

[marwan-abdellah]

@cornpo which operating system ?

[KeremKurban]

I have the same problem with windows on unix shell (wsl)

[KeremKurban]

After making a ssh connection , the installation finished but following the rest of the installation guide, it is still not running

./blender: error while loading shared libraries: libXrender.so.1: cannot open shared object file: No such file or directory