Computing morphology volume and surface area.

BlueBrain / NeuroMorphoVis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

https://portal.bluebrain.epfl.ch/

GNU General Public License v3.0

127 stars 26 forks source link

Computing morphology volume and surface area. #34

Closed marwan-abdellah closed 5 years ago

marwan-abdellah commented 5 years ago

The scientists have requested a new feature in the analysis toolbox to allow them to compute the volumes and surface area of the following:

Each segment in the morphology
Each section in the morphology
Total volume and surface area of each neurite in the morphology
Total volume and surface area of the entire morphology
Volume and surface area of the soma based on the sphere simplification or from the 3d mesh reconstructed from the soma toolbox.

marwan-abdellah commented 5 years ago

Added to the analysis toolbox.