BlueBrain NeuroR issues

BlueBrain / NeuroR

A collection of tools to repair morphologies

https://neuror.readthedocs.io/

GNU Lesser General Public License v3.0

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issues

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make tests compatible with having correct soma

#118 mgeplf closed 10 months ago
4
Fix: Remove unifurcations before writing repair

#117 arnaudon closed 10 months ago
1
Fix the 'cut-plane compute folder' command and create test output files in the proper directories

#116 adrien-berchet closed 1 year ago
6
Different results depending on availability of AVX-512 instruction set and numpy>1.25 's vectorized sort/argsort

#115 eleftherioszisis closed 1 year ago
2
Remove barely used nptyping

#114 eleftherioszisis closed 1 year ago
0
Improve documentation of the API

#113 adrien-berchet closed 1 year ago
0
Add JSON schema validation in Repair

#112 adrien-berchet closed 1 year ago
2
Add black/isort formatting

#111 arnaudon opened 2 years ago
0
Make compatible with neurom v4

#110 eleftherioszisis closed 6 months ago
0
Add plotly extras to install

#109 eleftherioszisis closed 2 years ago
0
Fix unifurcations when a 0-length leaf is removed

#108 adrien-berchet closed 2 years ago
1
Make sanitize section deletion non-recursive

#107 eleftherioszisis closed 2 years ago
7
Raise an Error if 0-length section is found at the soma

#106 FrancescoCasalegno closed 2 years ago
1
Sanitize deletes all children sections when parent section (non-soma) is zero

#105 mgeplf closed 2 years ago
1
Fix unravel

#104 arnaudon closed 2 years ago
7
Unraveling breaks up sections

#103 roesech closed 2 years ago
4
Fix for nptyping>=2

#101 adrien-berchet closed 2 years ago
0
nptyping==2 breaks NeuroR

#100 adrien-berchet closed 2 years ago
0
Sanitize deletes all children sections when parent section length is zero

#99 lidakanari closed 2 years ago
33
remove bluerepairSDK references

#98 jdcourcol closed 2 years ago
0
Sanitize with optional inhomogeneous check

#97 eleftherioszisis closed 2 years ago
5
axon from dendrite discussion

#96 arnaudon opened 2 years ago
1
Drop support of Python <= 3.6

#95 adrien-berchet closed 2 years ago
5
Add cut_plane sub-package in doc

#94 adrien-berchet closed 2 years ago
2
fix pylint: unspecified-encoding and consider-using-f-string

#93 mgeplf closed 3 years ago
1
add authors

#92 mgeplf closed 3 years ago
0
fix morph-tool dependency

#91 asanin-epfl closed 3 years ago
1
keep plotly-helper only in 'plotly' extras

#90 asanin-epfl closed 3 years ago
1
Add fix_points_in_soma() to remove neurite points located inside the soma

#89 adrien-berchet closed 3 years ago
4
update NeuroM dependency to 3.0.0

#88 asanin-epfl closed 3 years ago
1
better names for test_minimize per scipy version

#87 asanin-epfl closed 3 years ago
1
nosetests to pytest

#86 asanin-epfl closed 3 years ago
1
fix apical point

#85 arnaudon closed 3 years ago
8
change recursion of points with recursion of sections

#84 asanin-epfl closed 3 years ago
3
Fix docs

#83 mgeplf closed 3 years ago
3
update copyright

#82 mgeplf closed 3 years ago
0
follow the same logic as in the original Zero_Diameter_Fixer.cpp

#81 asanin-epfl closed 3 years ago
1
fix outdated NeuroM import

#80 arnaudon closed 3 years ago
3
use production version of NeuroM v2

#79 asanin-epfl closed 3 years ago
1
Segfault in fix_zero_diameters because of stack limit

#78 adrien-berchet closed 3 years ago
6
2 small issues in sanitize

#77 arnaudon closed 2 years ago
0
return None if no leaves

#76 arnaudon closed 3 years ago
1
add z-range to error detection

#75 arnaudon closed 3 years ago
1
update sanitize for morphio3.0

#74 arnaudon closed 3 years ago
1
Tree -> Section for neurom v2

#73 arnaudon closed 3 years ago
3
Remove use of Tree for neurom v2

#72 arnaudon closed 3 years ago
1
Improve repair by using pool of dendrites (as for axons)

#71 arnaudon opened 3 years ago
0