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BlueBrain / Ultraliser

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
https://portal.bluebrain.epfl.ch
GNU General Public License v3.0
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Implement an SWC exporter for skeletonized neurons #60

Closed marwan-abdellah closed 2 months ago

marwan-abdellah commented 1 year ago

Incrementally, implement a neuron SWC exporter from the skeletonized dataset. The exporter should:

  1. Initially, export all the valid branches as dendrites, even including the spines.
  2. Categorize the branches into either axons or dendrites.
  3. Recognize the apical dendrites from the basal dendrites.
  4. Filter the spines and export them individually.
marwan-abdellah commented 1 year ago

First implementation is done and neurons can be exported. Next: Branch types.

Note: Account for the removed branches due to loop merging.

marwan-abdellah commented 2 months ago

Implemented.