add `--region-name` as an option to `fit-average-densities`

[mgeplf]

• this way, alternative hierarchies can be used

[mgeplf]

@lecriste have you had a chance to try this, and see if it fixed the issue with renaming in the hierarchy?

[lecriste]

Not yet.

[mgeplf]

Ok, let me know when you have a chance.

[lecriste]

@mgeplf, I confirm this fixes the issue.

[mgeplf]

@mgeplf, I confirm this fixes the issue.

Excellent. That means that we don't need the change in https://github.com/BlueBrain/atlas-densities/pull/42 correct? Can we close that?

[lecriste]

@mgeplf, I confirm this fixes the issue.

Excellent. That means that we don't need the change in #42 correct? Can we close that?

Let me confirm when the current run of the pipeline completes.

[lecriste]

@mgeplf, we need to customize also this root value: https://github.com/BlueBrain/atlas-densities/blob/db30d0b4c7d6b6356dcf48a766ffd98a18ac9248/atlas_densities/densities/inhibitory_neuron_densities_optimization.py#L612

[mgeplf]

@mgeplf, we need to customize also this root value:

Please try https://github.com/BlueBrain/atlas-densities/pull/46 and let me know if it works

[lecriste]

It works.