Closed mgeplf closed 6 months ago
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This was meant to show that the split layers probabilities worked; not to be merged - closing.
atlas-densities mtype-densities create-from-probability-map \ --synapse-class INH \ --hierarchy-path=../data/1.json \ --annotation-path=../data/ccfv2/annotation_25.nrrd \ --probability-map $BASE/L1_probability_map.csv \ --probability-map $BASE/L23_probability_map.csv \ --probability-map $BASE/L4_probability_map.csv \ --probability-map $BASE/L5_probability_map.csv \ --probability-map $BASE/L6_probability_map.csv \ --marker gad67 $MOL/gad67.nrrd \ --marker pv $MOL/pv.nrrd \ --marker sst $MOL/sst.nrrd \ --marker vip $MOL/vip.nrrd \ --marker approx_lamp5 $MOL/approx_lamp5.nrrd \ --output-dir=output