BlueBrain / atlas-densities

Tools to compute densities in the context of brain atlases.
Apache License 2.0
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split probability_map.csv into isocortex layers #49

Closed mgeplf closed 6 months ago

mgeplf commented 10 months ago

atlas-densities mtype-densities create-from-probability-map \ --synapse-class INH \ --hierarchy-path=../data/1.json \ --annotation-path=../data/ccfv2/annotation_25.nrrd \ --probability-map $BASE/L1_probability_map.csv \ --probability-map $BASE/L23_probability_map.csv \ --probability-map $BASE/L4_probability_map.csv \ --probability-map $BASE/L5_probability_map.csv \ --probability-map $BASE/L6_probability_map.csv \ --marker gad67 $MOL/gad67.nrrd \ --marker pv $MOL/pv.nrrd \ --marker sst $MOL/sst.nrrd \ --marker vip $MOL/vip.nrrd \ --marker approx_lamp5 $MOL/approx_lamp5.nrrd \ --output-dir=output

codecov-commenter commented 10 months ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (main@b1a58cc). Click here to learn what that means. Patch has no changes to coverable lines.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #49 +/- ## ======================================= Coverage ? 97.76% ======================================= Files ? 22 Lines ? 1385 Branches ? 0 ======================================= Hits ? 1354 Misses ? 31 Partials ? 0 ``` | [Flag](https://app.codecov.io/gh/BlueBrain/atlas-densities/pull/49/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BlueBrain) | Coverage Δ | | |---|---|---| | [pytest](https://app.codecov.io/gh/BlueBrain/atlas-densities/pull/49/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BlueBrain) | `97.76% <0.00%> (?)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BlueBrain#carryforward-flags-in-the-pull-request-comment) to find out more.

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mgeplf commented 6 months ago

This was meant to show that the split layers probabilities worked; not to be merged - closing.