Inter-rater agreement data for Janelia Pyramidal Cells Layer 5 - Githubissues

BlueBrain / morphoclass

Neuronal morphology preparation and classification using Machine Learning.

https://morphoclass.readthedocs.io

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Inter-rater agreement data for Janelia Pyramidal Cells Layer 5 #43

Closed FrancescoCasalegno closed 2 years ago

FrancescoCasalegno commented 2 years ago

Fixes #25.

Description

Two files are added:

Classification_JulieM.xlsx - This is the original Excel spreadsheet provided by Julie Meystre, including her labels as well as per-sample comments (in free text format).
inter_rater-janelia-l5-ying_shi-julie_meystre.csv - This is a CSV file derived from the aforementioned Excel spreadsheet. It summarizes the information about the labels given by the two human experts, in order to allow for easy evaluation of the inter-rater agreement.

How to test?

Fetch the data from DVC remote: cd dvc/data/raw dvc pull janelia Then you should see two new files under the inter-rater folder:

janelia
├── inter-rater
│   ├── Classification_JulieM.xlsx
│   └── inter_rater-janelia-l5-ying_shi-julie_meystre.csv

Checklist

[x] This PR refers to an issue from the issue tracker. (if it is not the case, please create an issue first).
[x] All CI tests pass.