Closed FrancescoCasalegno closed 2 years ago
This issue and the bugs that are producing it are discussed in details in this comment: https://github.com/BlueBrain/NeuroR/issues/99#issuecomment-1143499575
Now that the corresponding PRs were created and merged both in NeuroR and morphology-workflows, we should be able to solve our problems by upgrading to the latest releases of these two pacakges.
Issue part 1: MCAR curation runs
Sanitize
(which deletes whole neurites)MCAR step
Sanitize
cannot be skipped, see https://github.com/BlueBrain/morphoclass/issues/4#issuecomment-1154943646. Indeed, even with the line https://github.com/BlueBrain/morphoclass/blob/d8383b5b56eaa393f413346b90d7f417c8d166b1/dvc/data/mcar-luigi.cfg#L42 runningproduces the following output (including info on
Santize
being executed!)Issue part 2: feature extraction removes unusable morphologies from dataset
produces