Closed FrancescoCasalegno closed 2 years ago
dvc.yaml
calls moprhology-workflows
on the luigi
stage Curate
: https://github.com/BlueBrain/morphoclass/blob/65a4909b0ee3250756a50b3f58e4e1356aa38438/dvc/dvc.yaml#L58-L62Curate
depends on 14 different output luigi
stages: https://github.com/BlueBrain/morphology-workflows/blob/bdd6cab92fcc35f01fb76c01d006619e47ceffcd/src/morphology_workflows/tasks/workflows.py#L72-L96luigi
stages are run:Align
CheckNeurites
Collect
Curate
-- the main stage we want to executeDetectErrors
EnsureNeuritesOutsideSoma
ErrorsReport
ExtractMarkers
Orient
PlotErrors
PlotMarkers
PlotMorphologies
Recenter
Resample
Sanitize
skip=True
is ignored. So we should remove it frommcar-luigi.cfg
configuration to avoid confusion.EnsureNeuritesOutsideSoma
andErrorsReport
are run by the moprhology workflow for MCAR curation. So we should also mention them in themcar-luigi.cfg
file even if we are not using them.