Closed FrancescoCasalegno closed 2 years ago
The current implementation of the plot-dataset-stats in DVC does not cover Janelia's pyramidal cells dataset, only BBP's pyramidal cells and interneurons: https://github.com/BlueBrain/morphoclass/blob/915309a13857bcad6a913763f2a66ace78183944/dvc/dvc.yaml#L30-L41 Notice that we cannot just change it to become
plot-dataset-stats
foreach: - pyramidal-cells - interneurons - janelia
because the deps file data/raw/${item}/morphologies does not exists for item='janelia' -- the data is indeeed under data/raw/janelia/mouselight_isocortex_ASCII_Files/ (the same path as the original Janelia source, which we decided to preserve).
deps
data/raw/${item}/morphologies
item='janelia'
data/raw/janelia/mouselight_isocortex_ASCII_Files/
The current implementation of the
plot-dataset-statsin DVC does not cover Janelia's pyramidal cells dataset, only BBP's pyramidal cells and interneurons: https://github.com/BlueBrain/morphoclass/blob/915309a13857bcad6a913763f2a66ace78183944/dvc/dvc.yaml#L30-L41 Notice that we cannot just change it to becomebecause the
depsfiledata/raw/${item}/morphologiesdoes not exists foritem='janelia'-- the data is indeeed underdata/raw/janelia/mouselight_isocortex_ASCII_Files/(the same path as the original Janelia source, which we decided to preserve).