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BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline
https://bodenmillergroup.github.io/ImcSegmentationPipeline/
MIT License
82 stars 35 forks source link

metadata acquisition #116

Closed Bunmi0616 closed 1 year ago

Bunmi0616 commented 1 year ago
image

This was not generated. Is it ok to still proceed?

nilseling commented 1 year ago

Hi @Bunmi0616

so the acquisition_metadata.csv file is not being generated? Does it work if you exclude IMC_MasterRun_1390_Male_AF.mcd from your analysis? Alternatively you could check out steinbock for processing.

nilseling commented 1 year ago

Closing due to inactivity - please reopen if this is still an issue.