Fixes issue #122, Switch to MCDFile.schema_xml to keep up with readimc.

BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline

https://bodenmillergroup.github.io/ImcSegmentationPipeline/

MIT License

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Fixes issue #122, Switch to MCDFile.schema_xml to keep up with readimc. #123

Closed Milad4849 closed 1 year ago

Milad4849 commented 1 year ago

Switched from MCDFile.metadata to MCDFile.schema_xml to keep up with the latest version of readimc.

nilseling commented 1 year ago

Thanks for addressing this! I would say we merge #121 first, then #123. Once we have merged develop into main we bump the version of the pipeline.

jwindhager commented 1 year ago

Awesome, thanks! Maybe pin readimc to versions >= the current one?