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BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline
https://bodenmillergroup.github.io/ImcSegmentationPipeline/
MIT License
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single-cell expression data #129

Closed Shawnmhy closed 1 year ago

Shawnmhy commented 1 year ago

Hello, I am wondering for the single-cell expression that is publicly available at Zenodo (for the Nature Genetics paper https://www.nature.com/articles/s41588-022-01041-y#code-availability), is it already normalized (arcsinh transformed and clipped) or it is raw data? Thank you

nilseling commented 1 year ago

For this, please reach out to Raza Ali.