Error when creating spatial experiment object from IMC segmentation pipeline: 'Could not guess delimiter'.

BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline

https://bodenmillergroup.github.io/ImcSegmentationPipeline/

MIT License

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Error when creating spatial experiment object from IMC segmentation pipeline: 'Could not guess delimiter'. #139

Closed AnanyaBhalla closed 4 months ago

AnanyaBhalla commented 7 months ago

I tried to generate a spatial experiment object 'spe2' as per instructions in 5.1.2: https://bodenmillergroup.github.io/IMCDataAnalysis/read-data.html.

'Error: Could not guess the delimiter.

Use vroom(delim =) to specify one explicitly.'

Has anyone else encountered a similar issue and addressed it successfully?

Milad4849 commented 7 months ago

Hi @AnanyaBhalla

Thank you for reaching. I cannot say whether your problem is to do with imcSegmentationPipeline or the ImcDataAnalysis. Could you please check the version of vroom that you have installed, update it in case is ourtdated and try to read the data again?

Milad4849 commented 4 months ago

Closing due to inactivity