Export cell outline as .tiff

BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline

https://bodenmillergroup.github.io/ImcSegmentationPipeline/

MIT License

86 stars 36 forks source link

Export cell outline as .tiff #23

Closed toobiwankenobi closed 2 years ago

toobiwankenobi commented 5 years ago

outline of cell objects are exported as grayscale .tiff image

votti commented 4 years ago

Hey @toobiwankenobi I finally found time to look again into this pull request again: The issue I am currently having with it, is that it uses CP 3.1.8 while all other pipelines are for CP 3.1.5 - meaning I would need to update all module to 3.1.8 in order to have everything consistently. Thus for the meanwhile I wont merge this.

nilseling commented 2 years ago

This will not be merged but keeping the branch