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BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline
https://bodenmillergroup.github.io/ImcSegmentationPipeline/
MIT License
83 stars 35 forks source link

How to generate .txt files form acquisition of .mcd files? #48

Closed KaWingLee9 closed 3 years ago

votti commented 3 years ago

Hi Kelvin,

.txt files are only OPTIONAL for this pipeline and I dont know of a script that directly generates them from the '.mcd' files.

Cheers, Vito

KaWingLee9 commented 3 years ago

Hi Vito,

I have addressed my problem thanks your help. Thank you for your reply! It is so helpful to me.

Sincerely, Kelvin Lee

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Hi Kelvin,

.txt files are only OPTIONAL for this pipeline and I dont know of a script that directly generates them from the '.mcd' files.

Cheers, Vito

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