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BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline
https://bodenmillergroup.github.io/ImcSegmentationPipeline/
MIT License
83 stars 35 forks source link

Pipeline not compatible with CellProfiler V4 #49

Closed jobha closed 3 years ago

jobha commented 3 years ago

When I try to open the first CellProfiler pipeline, I get the following error:

Error while loading Smooth Multichannel: Could not find the Smooth Multichannel module
Do you want to stop processing?

I have changed the plugin folder path and restarted CellProfiler, but it still doesn't work.

votti commented 3 years ago

What cellprofiler version do you use? Are you sure you added the path to ImcPluginsCP/plugins?

jobha commented 3 years ago

I am using version 4.0.4.

Yes, under "CellProfiler plugins directory" in CellProfiler preferences, the path selected is the ImcPluginsCP/plugins folder.

votti commented 3 years ago

Unfortunately 4.0.4 introduced many breaking changes and currently things are not compatible yet. Please use a CP3 version until this is fixed.

jobha commented 3 years ago

Thank you.