Add output folder to save filtered and compensated tiff files

BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline

https://bodenmillergroup.github.io/ImcSegmentationPipeline/

MIT License

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Add output folder to save filtered and compensated tiff files #51

Closed nilseling closed 2 years ago

nilseling commented 3 years ago

Hi Vito, here's an issue to track what we talked about. It would be good to write out filtered and compensated .tiff files into the tiffs folder as default step in the pipeline. Let's chat more about this at some point.

nilseling commented 2 years ago

Changed in #87