no session JSON files available.

BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline

https://bodenmillergroup.github.io/ImcSegmentationPipeline/

MIT License

83 stars 35 forks source link

no session JSON files available. #60

Closed rachel662 closed 3 years ago

rachel662 commented 3 years ago

Hi there, I've tried running a test dataset through the ipynb script, and when I get to the part where you generate a csv I get the error no session JSON files available, would anyone be able to help me solve this problem? Is it something to do with where I've put my data files?

marinabroz commented 3 years ago

Were you able to solve this? I am having the same issue and am stuck, any help would be appreciated!